MDTraj
Upstream project repository
Molecular dynamics trajectory loading and analysis routines.
Investigate Do selected trajectory observables agree with independent vector-geometry formulas?
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Upstream project repository
Molecular dynamics trajectory loading and analysis routines.
Investigate Do selected trajectory observables agree with independent vector-geometry formulas?
Upstream project repository
Agent-based simulation components and model-analysis tools for Python.
Investigate How does activation order change the outcome of a fixed deterministic agent-interaction fixture?
UCI Machine Learning Repository
Artificial logical concepts for comparing learned rules with documented generating concepts.
Investigate Which MONK concept fails first when irrelevant features are retained under a fixed protocol?
Stan User's Guide / Stan Development Team
A guide to using ODE models in inference, including solver choices, stiffness, tolerances, parameter estimation and adjoint methods.
Investigate How much do inferred parameters shift as ODE tolerances are tightened for a harmonic oscillator with synthetic observations?
UCI Machine Learning Repository
Generated card hands with rule-based labels for testing rare combinatorial classes.
Investigate Can a poker-hand classifier identify rare hand classes on a split that excludes reordered duplicates?
UCI Machine Learning Repository
Artificial oscillatory sequences for testing methods against controlled temporal structure.
Investigate Can a period-aware baseline outperform persistence on a fixed pseudo-periodic holdout?
Upstream project repository
Symbolic and numerical tools for deriving and simulating multibody dynamics.
Investigate Does a simple generated mechanical model satisfy the independently derived dynamics and energy behavior?
Upstream project repository
Model-order reduction tools for parameterized dynamical systems and numerical models.
Investigate How does reduced-basis dimension affect held-out error in a fixed linear parametric model?
Upstream project repository
Analysis and design tools for linear and nonlinear control systems.
Investigate Do state-space and transfer-function forms produce the same first-order step response within fixed tolerances?
Upstream project repository
Numerical simulation and analysis of quantum systems and open-system dynamics.
Investigate Does a fixed two-level evolution preserve trace and reproduce analytic populations under the chosen equation?
Upstream project repository
N-body simulation with gravitational dynamics integrators and analysis interfaces.
Investigate How do selected time steps affect energy and orbital-phase error for an analytic two-body orbit?
Upstream project repository
Sampling and analysis methods for global sensitivity analysis of computational models.
Investigate How do estimated variance-based sensitivity indices converge for a fixed analytic benchmark?
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