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Methods

Ordinary Differential Equations

A guide to using ODE models in inference, including solver choices, stiffness, tolerances, parameter estimation and adjoint methods.

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External resource. No execution or independent verification is claimed here.

A QUESTION TO TAKE FURTHER

How much do inferred parameters shift as ODE tolerances are tightened for a harmonic oscillator with synthetic observations?

The evaluator uses the analytic oscillator solution to assess forward error and independently examines inference diagnostics; the Stan runtime requires separate qualification.

What you could produce

  • A versioned minimal protocol, evaluator-owned test cases, and a comparison report with numerical/statistical uncertainty and failures.

Before you use it

  • A separately qualified Stan runtime and compatible compiled toolchain; no Stan environment is available in the current pilot

Limits to keep in view

  • No upstream example, source package, build hook or submitted code was executed.
  • The current qualified pilot accepts only self-contained Python 3.13 with a 90-second deadline. This reference's package/runtime is not qualified for that path.
  • The proposed protocol requires bounded resource estimates and an independently controlled evaluator before any scientific execution claim.

Source and permission context

Stan User's Guide / Stan Development Team. Ordinary Differential Equations. https://raw.githubusercontent.com/stan-dev/docs/1bc688a6f9a6c6931b7527c333345d2dcf6ee0bb/src/stan-users-guide/odes.qmd; observed version 1bc688a6f9a6c6931b7527c333345d2dcf6ee0bb.

Catalog listing reviewed. This review covers the description and source links displayed here.

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Reviewed 2026-09-14. Copying or adapting source files remains subject to their own terms.

documentation · CC-BY-ND-4.0

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code · BSD-3-Clause

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Before copying source material

  • Third-party figures, linked papers, datasets and dependency licenses have not been assessed; no external content is copied into this catalog.
  • CC BY-ND has a no-derivatives condition for shared adapted text/images; references and original descriptions do not license redistribution of adapted documentation.