Simulation & dynamics
Keep simulated behavior distinct from real-world observations.
Questions to work through.
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All 75 resources →2D elastodynamic metamaterials
UCI Machine Learning Repository
Pixelated metamaterial unit-cell designs and band-gap locations and widths for investigating simulation surrogate reliability.
Investigate How does a band-gap surrogate generalize to held-out metamaterial design regions?
[Re] A general model of hippocampal and dorsal striatal learning and decision making
ReScience C
A replication of a model combining hippocampal and dorsal-striatal learning for spatial decision making.
Investigate How does disabling each modeled learning component change performance on a prespecified navigation test?
[Re] A Multi-Functional Synthetic Gene Network
ReScience C
An Octave replication of a multifunctional synthetic gene-network model involving oscillatory and switching behavior.
Investigate Which simulated regime boundaries remain stable under solver refinement and small parameter perturbations?
[Re] A Neurodynamical Model for Working Memory
ReScience C
A replication of a neurodynamical working-memory model using recurrent or echo-state networks.
Investigate How does recall error vary with delay length under fixed input and noise schedules?
[Re] A Reservoir Computing Model of Reward-Modulated Motor Learning and Automaticity
ReScience C
A replication of reward-modulated motor learning and automaticity in a reservoir-computing model.
Investigate How do learning curves and post-training variability depend on reservoir initialization under a fixed reward schedule?
[Re] A simple rule for the evolution of cooperation on graphs and social networks
ReScience
A replication about the evolution of cooperation on graphs and social networks.
Investigate How do cooperation frequencies vary across evaluator-generated graph families under a fixed update rule?
[Re] Assortative matching and search
ReScience C
A Python replication of a search-and-matching model framed through game theory and markets.
Investigate How do matching statistics change under prespecified search-cost settings, and are terminal states stable under further updates?
[Re] Biodiversity of plankton by species oscillations and chaos
ReScience C
An R replication about plankton coexistence, species oscillations and chaotic ecological dynamics.
Investigate How do species persistence and oscillation summaries change with solver tolerance and initial populations?
[Re] Chaos in a Three-Species Food Chain
ReScience C
A Julia replication of chaotic dynamics in a three-species food-chain model.
Investigate Which finite-time trajectory and invariant summaries remain stable under step-size refinement?
[Re] Context-Dependent Encoding of Fear and Extinction Memories in a Large-Scale Network Model of the Basal Amygdala
ReScience C
A Python/Brian 2 replication of a basal-amygdala network model addressing context-dependent fear and extinction memories.
Investigate How sensitive is a prespecified model response contrast to integration resolution and network seed?
[Re] Groups of diverse problem-solvers outperform groups of highest-ability problem-solvers - most of the time
ReScience C
A replication of an agent-based problem-solving model comparing groups with different ability and diversity compositions.
Investigate How often does each group-selection rule perform best across evaluator-generated landscapes and fixed random seeds?
[Re] Hamiltonian Generative Networks
ReScience C
A replication about Hamiltonian generative networks for learning dynamical structure.
Investigate How does long-horizon energy drift compare with trajectory error on a small analytic mechanical system?