Original examples
A bounded bisection solver with bracket controls
Provide a small bisection implementation, a valid cubic-root example, an invalid-bracket control, and a high-precision Newton comparison.
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Software
Astropy
Astronomical computation tools for units, coordinates, time, tables, and data formats.
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Software
Biotite
Tools for computational biology, including sequence and molecular-structure analysis.
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Software
Bottleneck
Specialized array reductions and moving-window numerical operations.
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Software
Cantera
Thermodynamics, chemical kinetics, and transport calculations for reacting systems.
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Software
Chaospy
Probability distributions, quadrature, and polynomial-chaos tools for uncertainty quantification.
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Software
Clarabel.rs
A Rust implementation of a conic interior-point solver for convex optimization.
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Methods
Compressed Sparse Graph Routines (scipy.sparse.csgraph)
A tutorial on algorithms for graphs represented as sparse matrices, illustrated through path finding.
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Software
CVXOPT
Numerical tools and solvers for convex optimization with Python interfaces.
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Software
CVXPY
A modeling language for convex optimization problems with numerical solver interfaces.
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Software
DendroPy
Phylogenetic tree manipulation, simulation, and analysis in Python.
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Methods
Discrete Fourier Transforms (scipy.fft)
A reference for discrete Fourier, cosine, sine and Hankel transforms, including periodicity, normalization and computational caveats.
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